If it has swirl flaps, get rid of them, but I think you have the flapless version already which makes it easier.
The intake manifold collects a fair bit of crud so pays to pull that off and clean it all out too. With the EGR gone it shouldn't build up again.
The viscose fan hub is probably flogged out too, my preference is to ditch it and fit a good electric fan.
Oh and blank off the EGR coolant ports rather than looping them, coz all that does is create a thermostat bypass haha.